Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
hisat2/MANUAL at master · DaehwanKimLab/hisat2 · GitHub
Getting started with HISAT, StringTie, and Ballgown - Dave Tang's blog
Bioinformatics Analysis of Omics Data with the Shell & R | R-bloggers
StringTie
hisat2 - Bountysource
User manual | DEWE
Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients | Scientific Data
Expression | Griffith Lab
Compile and Software installation (II) – BCH709 Introduction to Bioinformatics
Manual | HISAT2
03 From fastq files to alignments – Introduction to RNA-seq
Mapping with HISAT2 - Bioinformatics Team (BioITeam) at the University of Texas - UT Austin Wikis
No-mixed behaviour HISAT2 - hisat2 - Galaxy Community Help
Problem with HISAT2 detection of reads mapping to repeats - rna-star - Galaxy Community Help
manual issue: does hisat2 support on the fly passing of --ss and --exon? · Issue #34 · gpertea/stringtie · GitHub
Biotechvana
Alignment | Griffith Lab
Manual | HISAT2
Directional/stranded RNA-seq data -which parameters to choose?
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
StringTie
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
RNASeq Analysis With the Command Line
